Yup yup, honestly it would be very straightfoward and easy to make all options available through [turn this on, turn this off] combined with [preset list of options] but again there would be 2^x entries in the list or 2^(x-1) or some other huge number.

{tldr}

In order from your example, though obviously this isn't realistic having an enormous list to scroll:

[physical and visible] [mental and visible]
[physical and mental] [visible]
[physical][mental and visible]
[physical][mental][visible]
[same as first, makes no sense otherwise, unless the first means physical xor mental]
[physical and mental and visible]

Each set of brackets requiring a check and if any return yes it triggers,
requiring at least 7 entries in the list for this example alone.
Putting aside the cpu of checking all the things for all the enemies for all the stuff every turn which would be necessary anytime something's not short circuited by [on cooldown],
you'd have to go through xxxx entries in a switch case lua equivalent, probably most easily done using bitwise or such, but really without a better interface for interacting with all this it's seeming less viable; even if we were to get to that point where the user's essentially using scripting... at that point they're basically coding AI.

I am not of a mind where 'auto use plays the game for you' (in a negative light) but maybe it would be better to stick to often used examples rather than obscure ones. How often does auto use really need to trigger above half health while under a mental detriment and no elite enemies within 2 to 8 tiles? (plus more than one enemy selector will generally be redundant, life <>50 conflict, and 'while resting' is really just a +1 instead of part of 2^x)

One thing to keep in mind is somehow short circuiting the 'vim within' or 'vim above' or what ever (and related energy bars) to not make entries in the list if they don't have the bar.
Items don't use bars and you have the bar permanantly as long as you have an ability associated with it right? I think. Or perma after getting it once. Either way.

Short circuiting stealth/invis related entries might be more complicated, since you'd have to check for each ability that grants it individually, and once modded classes enter the picture that would screw that up. So no removing there, probably.

'available' would probably need to reset all the other selected options to off, both as ease of reset and since it's implied when anything else is selected.

Edit: A nice extra addition would be 'Activated'/'Deactivated' at the top so one didn't have to recheck all the boxes but could temporarily turn on/off a skill specifically.
'if not activated then auto-use = 0 end'

{/tldr}

Anyway, I probably won't work on this ui-version unless you put it up on github or something, and while I might update mine with some options it seems it might be redundant at this point, except for having a short term release goal of 'more options'; which I'm not opposed to doing.
I have used mine (and newly yours =P) in characters I've played when I had time to since releasing mine a few weeks ago, and felt a few lacking combinations.